########################################
# Program: needle
# Rundate: Thu 11 Feb 2016 07:14:19
# Commandline: needle
#    -auto
#    -stdout
#    -asequence emboss_needle-I20160211-071418-0007-38421232-oy.asequence
#    -bsequence emboss_needle-I20160211-071418-0007-38421232-oy.bsequence
#    -datafile EDNAFULL
#    -gapopen 10.0
#    -gapextend 0.5
#    -endopen 10.0
#    -endextend 0.5
#    -aformat3 pair
#    -snucleotide1
#    -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: HM746760.1
# 2: 2976
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity:     310/394 (78.7%)
# Similarity:   310/394 (78.7%)
# Gaps:          59/394 (15.0%)
# Score: 1450.0
# 
#
#=======================================

HM746760.1         1 TCATGGCTCGTACCAAGCAGACCGCTCGCAAGTCTACCGGAGGCAAGGCC     50
                                                     ||||||||||||||||||
2976               1 --------------------------------tcTACCGGagGCAAGGCC     18

HM746760.1        51 CCCCGCAAGCAGCTGGCCACCAAGGCCGCTCGCAAGAGCGCCCCGGCCAC    100
                     |||.|.||||||||||||||||||||.|||||||||||.|||||.||.||
2976              19 CCCAGGAaGCAGCTGGCCACCAAGGCAGCTCGCAAGAGTGCCCCAGCAAC     68

HM746760.1       101 TGGGGGAGTTAAGAAGCCCCATCGTTACAGGCCCGGAACCGTCGCCCTGC    150
                     |||.|||||.|||||||||||||||||||||||.||.||.||.||.||||
2976              69 TGGTGGAGTGAAGAAGCCCCATCGTTACAGGCCTGGCACAGTTGCTCTGC    118

HM746760.1       151 GTGAGATCCGTCGTTACCAGAAGAGCACTGAGCTGCTGATCCGCAAGCTG    200
                     ||||||||||||||||||||||||||||.|||||||||||||||||||||
2976             119 GTGAGATCCGTCGTTACCAGAAGAGCACAGAGCTGCTGATCCGCAAGCTG    168

HM746760.1       201 CCCTTCCAGCGTCTGGTGCGCGAGATCGCCCAGGACTTCAAGACCGACCT    250
                     ||.|||||||||||||||||.|||||||||||||||||||||||.|||||
2976             169 CCATTCCAGCGTCTGGTGCGTGAGATCGCCCAGGACTTCAAGACTGACCT    218

HM746760.1       251 TCGCTTCCAGAGCTCTGCCGTTATGGCCCTGCAGGAGGCCAGCGAGGCCT    300
                     .|||||||||||||||||.||.|||||..||||||||||.||||||||.|
2976             219 GCGCTTCCAGAGCTCTGCTGTCATGGCTTTGCAGGAGGCTAGCGAGGCTT    268

HM746760.1       301 ACCTGGTTGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAG    350
                     |||||||||||||||||||||||||||||.||||||||||||||||||||
2976             269 ACCTGGTTGGCCTGTTCGAGGACACCAACTTGTGCGCCATCCACGCCAAG    318

HM746760.1       351 CGTGTCACTATTATGCC---------------------------    367
                     |||||||||||||||||                           
2976             319 CGTGTCACtATtATGCCyAAGGATATGTCATAGCTGTTTCCdga    362


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